Add 3BPA_isolated_atoms files
Browse files- README.md +55 -0
- co/co_0.parquet +3 -0
- ds.parquet +3 -0
README.md
ADDED
|
@@ -0,0 +1,55 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
---
|
| 2 |
+
configs:
|
| 3 |
+
- config_name: default
|
| 4 |
+
data_files: "co/*.parquet"
|
| 5 |
+
- config_name: info
|
| 6 |
+
data_files: "ds.parquet"
|
| 7 |
+
license: cc-by-4.0
|
| 8 |
+
tags:
|
| 9 |
+
- molecular dynamics
|
| 10 |
+
- mlip
|
| 11 |
+
- interatomic potential
|
| 12 |
+
pretty_name: 3BPA isolated atoms
|
| 13 |
+
---
|
| 14 |
+
### <details><summary>Cite this dataset </summary>Kovács, D. P., Oord, C., Kucera, J., Allen, A. E. A., Cole, D. J., Ortner, C., and Csányi, G. _3BPA isolated atoms_. ColabFit, 2023. https://doi.org/10.60732/bfdb46b7</details>
|
| 15 |
+
#### This dataset has been curated and formatted for the ColabFit Exchange
|
| 16 |
+
#### This dataset is also available on the ColabFit Exchange:
|
| 17 |
+
https://materials.colabfit.org/id/DS_gaq0fec8i6ik_0
|
| 18 |
+
#### Visit the ColabFit Exchange to search additional datasets by author, description, element content and more.
|
| 19 |
+
https://materials.colabfit.org
|
| 20 |
+
<br><hr>
|
| 21 |
+
# Dataset Name
|
| 22 |
+
3BPA isolated atoms
|
| 23 |
+
### Description
|
| 24 |
+
Reference C, H, O, and N atoms from 3BPA, used to showcase the performance of linear atomic cluster expansion (ACE) force fields in a machine learning model to predict the potential energy surfaces of organic molecules.
|
| 25 |
+
### Dataset authors
|
| 26 |
+
Dávid Péter Kovács, Cas van der Oord, Jiri Kucera, Alice E. A. Allen, Daniel J. Cole, Christoph Ortner, Gábor Csányi
|
| 27 |
+
### Publication
|
| 28 |
+
https://doi.org/10.1021/acs.jctc.1c00647
|
| 29 |
+
### Original data link
|
| 30 |
+
https://doi.org/10.1021/acs.jctc.1c00647
|
| 31 |
+
### License
|
| 32 |
+
CC-BY-4.0
|
| 33 |
+
### Number of unique molecular configurations
|
| 34 |
+
4
|
| 35 |
+
### Number of atoms
|
| 36 |
+
4
|
| 37 |
+
### Elements included
|
| 38 |
+
C, H, N, O
|
| 39 |
+
### Properties included
|
| 40 |
+
energy, cauchy stress
|
| 41 |
+
<br>
|
| 42 |
+
<hr>
|
| 43 |
+
|
| 44 |
+
# Usage
|
| 45 |
+
- `ds.parquet` : Aggregated dataset information.
|
| 46 |
+
- `co/` directory: Configuration rows each include a structure, calculated properties, and metadata.
|
| 47 |
+
- `cs/` directory : Configuration sets are subsets of configurations grouped by some common characteristic. If `cs/` does not exist, no configurations sets have been defined for this dataset.
|
| 48 |
+
- `cs_co_map/` directory : The mapping of configurations to configuration sets (if defined).
|
| 49 |
+
<br>
|
| 50 |
+
#### ColabFit Exchange documentation includes descriptions of content and example code for parsing parquet files:
|
| 51 |
+
- [Parquet parsing: example code](https://materials.colabfit.org/docs/how_to_use_parquet)
|
| 52 |
+
- [Dataset info schema](https://materials.colabfit.org/docs/dataset_schema)
|
| 53 |
+
- [Configuration schema](https://materials.colabfit.org/docs/configuration_schema)
|
| 54 |
+
- [Configuration set schema](https://materials.colabfit.org/docs/configuration_set_schema)
|
| 55 |
+
- [Configuration set to configuration mapping schema](https://materials.colabfit.org/docs/cs_co_mapping_schema)
|
co/co_0.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:5d9e84073dcac4bdef22a13e5d914e62fc02a76c596ce6dcc6b3c48bc107331c
|
| 3 |
+
size 18516
|
ds.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:3a6c810b49c9d43c851ac4db5c9f92a99ac3603d28608af04c2a75aac867588d
|
| 3 |
+
size 16866
|