gpwolfe commited on
Commit
4a49d78
·
verified ·
1 Parent(s): c842f61

Add sGDML_Benzene_ccsdt_NC2018_train files

Browse files
Files changed (3) hide show
  1. README.md +55 -0
  2. co/co_0.parquet +3 -0
  3. ds.parquet +3 -0
README.md ADDED
@@ -0,0 +1,55 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ configs:
3
+ - config_name: default
4
+ data_files: "co/*.parquet"
5
+ - config_name: info
6
+ data_files: "ds.parquet"
7
+ license: mit
8
+ tags:
9
+ - molecular dynamics
10
+ - mlip
11
+ - interatomic potential
12
+ pretty_name: sGDML Benzene ccsdt NC2018 train
13
+ ---
14
+ ### <details><summary>Cite this dataset </summary>Chmiela, S., Sauceda, H. E., Müller, K., and Tkatchenko, A. _sGDML Benzene ccsdt NC2018 train_. ColabFit, 2023. https://doi.org/10.60732/a3ca9725</details>
15
+ #### This dataset has been curated and formatted for the ColabFit Exchange
16
+ #### This dataset is also available on the ColabFit Exchange:
17
+ https://materials.colabfit.org/id/DS_8xk0v5v9dbx0_0
18
+ #### Visit the ColabFit Exchange to search additional datasets by author, description, element content and more.
19
+ https://materials.colabfit.org
20
+ <br><hr>
21
+ # Dataset Name
22
+ sGDML Benzene ccsdt NC2018 train
23
+ ### Description
24
+ The train set of a train/test pair from the benzene dataset from sGDML. To create the coupled cluster datasets, the data used for training the models were created by running ab initio MD in the NVT ensemble using the Nosé-Hoover thermostat at 500 K during a 200 ps simulation with a resolution of 0.5 fs. Energies and forces were recalculated using all-electron coupled cluster with single , double and perturbative triple excitations (CCSD(T)). The Dunning correlation-consistent basis set cc-pVDZ was used for benzene. All calculations were performed with the Psi4 software suite.
25
+ ### Dataset authors
26
+ Stefan Chmiela, Huziel E. Sauceda, Klaus-Robert Müller, Alexandre Tkatchenko
27
+ ### Publication
28
+ https://doi.org/10.1038/s41467-018-06169-2
29
+ ### Original data link
30
+ http://sgdml.org/
31
+ ### License
32
+ MIT
33
+ ### Number of unique molecular configurations
34
+ 999
35
+ ### Number of atoms
36
+ 11988
37
+ ### Elements included
38
+ C, H
39
+ ### Properties included
40
+ energy, atomic forces, cauchy stress
41
+ <br>
42
+ <hr>
43
+
44
+ # Usage
45
+ - `ds.parquet` : Aggregated dataset information.
46
+ - `co/` directory: Configuration rows each include a structure, calculated properties, and metadata.
47
+ - `cs/` directory : Configuration sets are subsets of configurations grouped by some common characteristic. If `cs/` does not exist, no configurations sets have been defined for this dataset.
48
+ - `cs_co_map/` directory : The mapping of configurations to configuration sets (if defined).
49
+ <br>
50
+ #### ColabFit Exchange documentation includes descriptions of content and example code for parsing parquet files:
51
+ - [Parquet parsing: example code](https://materials.colabfit.org/docs/how_to_use_parquet)
52
+ - [Dataset info schema](https://materials.colabfit.org/docs/dataset_schema)
53
+ - [Configuration schema](https://materials.colabfit.org/docs/configuration_schema)
54
+ - [Configuration set schema](https://materials.colabfit.org/docs/configuration_set_schema)
55
+ - [Configuration set to configuration mapping schema](https://materials.colabfit.org/docs/cs_co_mapping_schema)
co/co_0.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:c5e783d425d86c2bbc1b48ae1ff335502e5e02fcfc1ea0fd6babf7ed762e20e5
3
+ size 978322
ds.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:9154b8700345a26416caaf350dd268249fd6bde8bddde633915685b4f75b1a12
3
+ size 18458